I am sorry to hear that you have been feeling unwell.
Flu can give you aching muscles and joints. However, it is unusual to give rise to a swollen knee and I would be looking at other explanations for this symptom.
Unfortunately, I am not able to work out whether or not you have Lyme’s disease from the information you have provided, but there are tests that can help us work this out.
I hope that this is helpful to you.
Do you have questions? Please feel free to ask.
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